Modern biological imaging requires informatics tools for the acquisition, analysis, visualization and dissemination of complex multidimensional image datasets. Open Source software has become a powerful tool for image informatics due to its open access, easily customizable interfaces and flexibility. We present the ImageJ based toolkit FIJI (www.fiji.sc) as a platform for interoperability demonstrating how it can be used for basic and advanced analysis of complex image datasets and be interfaced directly with other software tools for visualization, dissemination and acquisition. FIJI can also be easily customized directly by the bench scientist through powerful scripting and plugin functionality. FIJI will be demonstrated and shown with functionality shown for specific advanced features including segmentation and tracking.
FIJI ImageJ: Open Source Image Informatics for Multidimensional Imaging (2014 Scientific Tutorial)
Modern biological imaging requires informatics tools for the acquisition, analysis, visualization and dissemination of complex multidimensional image datasets. Open Source software has become a powerful tool for image informatics due to its open access, easily customizable interfaces and flexibility. We present the ImageJ based toolkit FIJI (www.fiji.sc) as a platform for interoperability demonstrating how it can be used for basic and advanced analysis of complex image datasets and be interfaced directly with other software tools for visualization, dissemination and acquisition. FIJI can also be easily customized directly by the bench scientist through powerful scripting and plugin functionality. FIJI will be demonstrated and shown with functionality shown for specific advanced features including segmentation and tracking.
Speaker Information
Kevin Elicieiri   [ view bio ]
Individual topic purchase: Selected
International Society for Advancement of Cytometry
ICCE: 1.50
American Society for Clinical Pathology
CMLE: 1.50
This continuing medical laboratory education activity is recognized by the American Society for Clinical Pathology for 1.5 CMLE credit. ASCP CMLE credits are acceptable for the ASCP Board of Registry Certification Maintenance Program.
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